How can you instrument certain files with one template and other files with another template?
There are two ways you can do this:
1) Create a Standard EXE project in VB, and add all the files that you want to instrument with one template to it. Save the project. Do the same thing with a new project for each additional template you want to use. Run FailSafe on each project with the corresponding template. Then open the original project and add the FailSafe.bas and FailSafe.frm to it.
2) Open the project in FailSafe and select the files you want to instrument with the first template. Select the template and run. Choose the next set of files to instrument, select the next template and run again.