To everyone else reading this, make sure you read the readme and follow the proper update procedures. If you don't, you may see that syncing is completely broken (though easily fixed by finishing the update process).
Hmm I ran the /opt/novell/datasync/update.sh script after doing the update and still not syncing. I can see the Groupwise Connector sending it on to the sync engine. Anything I might have missed beyond that?