What file extension are you using for ModScript (i.e. Chaiscript) files?
I'm currently using ".chai". For AppScript I started using ".tsc" (i.e. "TeamScript") many years ago, along with ".tsl" for "Teamscript Library" files which are libraries of functions to be "included".
Using ".msc" for "ModScript" might cause confusion because of the name collision with Windows "console" files.